Race held at the Sepang International Circuit circuit
| Position | No. | Pilot | Team | Brand | Time | Laps | Points | Start |
|---|---|---|---|---|---|---|---|---|
| 1 | 46 |
Valentino Rossi
|
Fiat Yamaha Team | Yamaha | 43'07.829 | 21 | 25 | 1 |
| 2 | 65 |
Loris Capirossi
|
Ducati Marlboro Team | Ducati | 43'08.678 | 21 | 20 | 3 |
| 3 | 26 |
Dani Pedrosa
|
Repsol Honda Team | Honda | 43'11.692 | 21 | 16 | 5 |
| 4 | 69 |
Nicky Hayden
|
Repsol Honda Team | Honda | 43'13.609 | 21 | 13 | 2 |
| 5 | 15 |
Sete Gibernau
|
Ducati Marlboro Team | Ducati | 43'17.130 | 21 | 11 | 6 |
| 6 | 21 |
John Hopkins
|
Team Suzuki MotoGP | Suzuki | 43'18.910 | 21 | 10 | 8 |
| 7 | 10 |
Kenny Jr Roberts
|
Team Roberts | 43'19.667 | 21 | 9 | 4 | |
| 8 | 27 |
Casey Stoner
|
Lcr Honda | Honda | 43'20.096 | 21 | 8 | 10 |
| 9 | 33 |
Marco Melandri
|
Fortuna Honda | Honda | 43'22.848 | 21 | 7 | 9 |
| 10 | 5 |
Colin Edwards
|
Camel Yamaha Team | Yamaha | 43'27.738 | 21 | 6 | 11 |
| 11 | 71 |
Chris Vermeulen
|
Team Suzuki MotoGP | Suzuki | 43'32.200 | 21 | 5 | 16 |
| 12 | 7 |
Carlos Checa
|
Tech3 Yamaha | Yamaha | 43'38.713 | 21 | 4 | 15 |
| 13 | 17 |
Randy De Puniet
|
Kawasaki Racing Team | Kawasaki | 43'44.016 | 21 | 3 | 7 |
| 14 | 6 |
Makoto Tamada
|
Konica Minolta Honda | Honda | 43'56.606 | 21 | 2 | 13 |
| 15 | 66 |
Alexander Hofmann
|
Pramac d'Antin MotoGP | 44'06.910 | 21 | 1 | 17 | |
| 16 | 77 |
James Ellison
|
Tech3 Yamaha | Yamaha | 44'13.616 | 21 | 0 | 18 |
| 17 | 30 |
Jose Luis Cardoso
|
Pramac d'Antin MotoGP | 44'45.691 | 21 | 0 | 19 | |
| 1 | 24 |
Toni Elias
|
Fortuna Honda | Honda | 20'39.952 | 10 | 0 | 14 |
| 2 | 56 |
Shinya Nakano
|
Kawasaki Racing Team | Kawasaki | 0 | 0 | 12 |
Sepang International Circuit motorcycle circuit